class: top, right, inverse ## ACCE Research Data and Project Management *** .bottom[ # Collaborative `Github` in `Rstudio` #### 10-11 April 2019, University of Sheffield #### Dr Anna Krystalli @annakrystalli ] --- # Session Roadmap <br> ### 1 Introductions #### - **get to know github** - github as a computational research tool --- # Session Roadmap <br> ### 2 Get stuck in #### - [Collaborative github through rstudio](https://nhm-stars.github.io/materials/day04/evolottery.html) #EvoLottery (40 mins) - In this exercise, each participant will fork a github repo, and contribute a file required to simulate the **evolutionary trajectory of an imaginary species' body size**. - We'll use github to collate all species files and plot them all up together at the end! We'll also **discover the skull and beak shapes** associated with each simulated species size. --- class: top, right, inverse # introductions: **get to know github** *** ## **GitHub features** --- #### Back up and sync through the cloud <figure> <img src="assets/remotes.png"> <figcaption>Image: Jessica Lord, 2013 BSD</figcaption> </figure> --- #### Fork and contribute to other's work <figure> <img src="assets/clone.png" height="500px"> <figcaption>Image: Jessica Lord, 2013 BSD</figcaption> </figure> --- ## **GitHub for science** *** > - ideal for managing the full suite of research outputs such as datasets, statistical code, figures, lab notes, and manuscripts. > - supports peer review, commenting, and discussion. > - Diverse range of efforts, from individual to large bioinformatics projects, laboratory repositories, as well as global collaborations have found a home on GitHub <br> --- ### remote repositories centralising information e.g. [**weecology** / ***"Nine simple ways to make it easier to (re)use your data" paper***](http://ojs.library.queensu.ca/index.php/IEE/article/view/4608/0) [<img src="assets/repo-1.png" width="500px"/>](https://github.com/weecology/data-sharing-paper) <br> --- ### commits traceability [<img src="assets/commits-1.png" width="500px"/>](https://github.com/ropensci/rfishbase/commits/master) <br> --- ### issues project management [<img src="assets/issues-1.png" width="500px"/>](https://github.com/weecology/data-sharing-paper/issues) <br> --- ### graphs #### project & team tracking tracking contributors [<img src="assets/track-1.png" width="500px"/>](https://github.com/weecology/data-sharing-paper/graphs/contributors) --- tracking commits [<img src="assets/track-2.png" width="500px"/>](https://github.com/weecology/data-sharing-paper/network) <br> --- class: center # **entire process of project evolution reproducible** <br> --- class: top, right, inverse ## **Practical: Github & Rstudio for collaborative coding** *** --- ### **#EvoLottery** **Beak and skull shapes in birds of prey (“raptors”) are strongly coupled and largely controlled by size.** - In this exercise, each participant will **fork a github repo**, and **contribute a file** required to simulate the *evolutionary trajectory of an imaginary species' body size*. - We'll use **github** to **collate all species files** and **plot** them all up together at the end! We'll also **discover the skull and beak shapes** associated with each simulated species size. ### [**Enter Practical**](evolottery.html) ### See [**Collaborative plot**](https://rse.shef.ac.uk/collaborative_github_exercise/plot_trait_evolution.html) --- ## Get back [home](index.html)