rrcompendium

Binder

This repository contains the data and code for our paper:

Krystalli, A, (YYYY). Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools. Name of journal/book https://doi.org/xxx/xxx

Our pre-print is online here:

Krystalli, A, (YYYY). Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools. Name of journal/book, Accessed 06 May 2021. Online at https://doi.org/xxx/xxx

How to cite

Please cite this compendium as:

Krystalli, A, (2021). Compendium of R code and data for Partial Reproduction of Boettiger Ecology Letters 2018;21:1255–1267 with rrtools. Accessed 06 May 2021. Online at https://doi.org/xxx/xxx

Contents

The analysis directory contains:

  • :file_folder: paper: R Markdown source document for manuscript. Includes code to reproduce the figures and tables generated by the analysis. It also has a rendered version, paper.docx, suitable for reading (the code is replaced by figures and tables in this file)
  • :file_folder: data: Data used in the analysis.
  • :file_folder: figures: Plots and other illustrations
  • :file_folder: supplementary-materials: Supplementary materials including notes and other documents prepared and collected during the analysis.

How to run in your broswer or download and run locally

This research compendium has been developed using the statistical programming language R. To work with the compendium, you will need installed on your computer the R software itself and optionally RStudio Desktop.

You can download the compendium as a zip from from this URL: master.zip. After unzipping: - open the .Rproj file in RStudio - run devtools::install() to ensure you have the packages this analysis depends on (also listed in the DESCRIPTION file). - finally, open analysis/paper/paper.Rmd and knit to produce the paper.docx, or run rmarkdown::render("analysis/paper/paper.Rmd") in the R console

Licenses

Text and figures : CC-BY-4.0, Copyright (c) 2018 Carl Boettiger.

Code : See the DESCRIPTION file

Data : CC-BY-4.0, Copyright (c) 2018 Carl Boettiger.

Contributions

We welcome contributions from everyone. Before you get started, please see our contributor guidelines. Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.